misc — Miscellaneous scripts

This directory is organized into the following sub-directories.

assembly

  • approve_assemblies.py - Approve all assemblies for selected entries.
  • delete_contigs.py - Delete contigs(if present) from sequence experiments of selected entries.
  • disapprove_assemblies.py - Disapprove all assemblies for selected entries.
  • import_traces.py - Import ABI sequence trace files into a connected database.

gui

  • set_field.py - A simple PyQt based dialog application to set field value of selected entries. (Related blog post).
  • setfielddlg.ui - Qt Designer user interface definition file (XML Format).

utils

  • bn6_epydoc.py - Generate epydoc documentation of Bionumerics 6 Python modules.
  • concat_characters.py - Concatenate sequences in a character set experiment for a list of keys.
  • create_exper.py - Create sequence experiments using experiment names from AB1 files.
  • dbf.py - Common database functions.
  • delete_subsets.py - Delete all empty subsets.
  • logging_example.py - Using the python logging module.
  • unittest_example.py - Using the unittest module.